A collection of links to useful or interesting resources
Allen Cell Structure Segmenter
Python-based open source toolkit for 3D segmentation of intracellular structures in fluorescence microscope images. Brings together classic image segmentation and iterative deep learning workflows. From Allen Institute.
cellpose: a generalist algorithm for cellular segmentation
Python based. Online demonstration of segmentation of 2D images of cells. Drag and drop for segmentation of fluorescence, bright-field, and electron microscopy images. Animal and plant cells. Quite impressive. Code available on GitHub. Paper on ArXiv. From Janelia.
- The Missing Semester of Your CS Education
Teaches you how to master the command-line, use a powerful text editor, use fancy features of version control systems, and much more! From MIT.
Practical Deep Learning for Coders, v3
Requires that you can code and have access to a GPU, but not much else. Uses Python and PyTorch, no Keras of TensorFlow here. Free and without adds, the way a good online course should be. From fast.ai (“Making neural nets uncool again”).